Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs1056042 | chr1:48764419 | C/T | 7.41E-5 | 488 | 17.68 | 14.8 | 14.9 | KM Plot |
| THCA | rs10565130 | chr6:133087375 | CTTATTTAT/C | 0.000205 | 484 | 15.9 | 15 | 17.77 | KM Plot |
| THCA | rs10570792 | chr8:52444880 | CTT/C | 0 | 489 | 16.38 | 14.55 | 7.3 | KM Plot |
| THCA | rs10583 | chr14:24662177 | C/T | 1.71E-10 | 490 | 15.67 | 16.97 | 13.85 | KM Plot |
| THCA | rs10607522 | chr3:155574831 | TCA/T | 9.52E-5 | 484 | 16.57 | 14.63 | 9.75 | KM Plot |
| THCA | rs10622401 | chr14:36015660 | G/GTAA | 6.01E-6 | 480 | 16.22 | 16.07 | 10.4 | KM Plot |
| THCA | rs10649918 | chr15:41533058 | C/CTT | 0.000249 | 472 | 15.17 | 14.93 | 17.67 | KM Plot |
| THCA | rs10713869 | chr9:36031071 | GT/G | 9.08E-6 | 471 | 15.93 | 15.08 | 17.93 | KM Plot |
| THCA | rs10742244 | chr11:4163558 | G/A | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs10742245 | chr11:4163561 | T/C | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs10742246 | chr11:4167604 | A/G | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs10742247 | chr11:4167903 | A/C | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs1074250 | chr19:15864802 | A/G | 0.000309 | 490 | 16.33 | 14.93 | 19.13 | KM Plot |
| THCA | rs10742830 | chr11:48116232 | A/G | 5.77E-5 | 490 | 13.83 | 15.78 | 15.9 | KM Plot |
| THCA | rs1074526 | chr15:89070382 | C/A | 0.00022 | 488 | 16.37 | 15.25 | 14.7 | KM Plot |